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Which DNA purity issue can be very problematic for restriction enzyme reaction?

Answer and explanation

Correct answer: Phenol ethanol or salt carryover

The direct answer is option A: carryover of phenol, ethanol, or excess salts can seriously interfere with a restriction enzyme reaction. DNA purification chemicals are useful during extraction, but traces left in the final DNA preparation may inhibit the enzyme or disturb the reaction conditions. Phenol can damage proteins, ethanol can interfere when present in excess, and salts can change ionic strength or enzyme performance. Option A is correct because these contaminants can produce weak, incomplete, or absent digestion even when the DNA sequence is suitable. Option B is wrong because a label on the DNA tube does not chemically inhibit the enzyme; it is needed for identification. Option C is wrong because tube shape is not normally the relevant purity problem. Option D is wrong because a gel photograph is made after the reaction and cannot contaminate the reaction mixture. Before digestion, use clean DNA, remove wash solvent properly, and avoid carrying unnecessary salts into the reaction. If needed, cleanup or dilution can help, but dilution must not reduce DNA below a useful concentration. Memory cue: clean DNA gives the enzyme a clean reaction environment.

Related tags

Dna PurityEnzyme InhibitionCarryover

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